PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00090.1

Common Name

ZOSMA_57G00090

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 188aa MW: 21152.4 Da PI: 9.4852

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.1e-14	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr ++k+ + ++ +++++ Csk+g+++ t+ +rr++ + r+gC ++k k+++ +++w+ ++++ +HnH+++ Zosma57g00090.1 6 YYDFASSIGFSVRLGSTKNIldkeTGQKILVMKRLLCSKQGSPNLILPLTNGTRRKNGVFRCGCLTSVKFKRTDrSDNWVTDSVNFDHNHPFT 98 999********9998876664344556789********9999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-11	6	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MVVQSYYDFA SSIGFSVRLG STKNILDKET GQKILVMKRL LCSKQGSPNL ILPLTNGTRR 60 KNGVFRCGCL TSVKFKRTDR SDNWVTDSVN FDHNHPFTTP SKIRYLPINR SISHTSKLLF 120 SSLADVHVPV SQQAAYFSNQ LGGPQNTGCM TLDINNMVRD DRIELKNYDV DLIIEEFEMK 180 KLCALLL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256211	2e-36	AC256211.1 Zostera marina clone XTP08-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NV92	1e-137	A0A0K9NV92_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-10	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma57g00090.1