PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma57g00370.1
Common NameZOSMA_57G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 315aa    MW: 35672.5 Da    PI: 7.9062
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma57g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35251152101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++i+e+++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+++ll+
  Zosma57g00370.1  25 FLTKTHQIVENPAVDDVISWNEDGSTFVVWRPVEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRKGDTQLLC 109
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Zosma57g00370.1 110 DIQRRK 115
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3715109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPPPPYKKMM DSAMQESHRS VPTPFLTKTH QIVENPAVDD VISWNEDGST FVVWRPVEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RKGDTQLLCD IQRRKLMVSP  120
SNPLPIPTPM SVSLHVPVQV QPSRIRSPAN SWEEDQVLSS NSNTSPRVTP SISCRAGVRT  180
ATTAELVDEN DRLRKENGNL NRELTQMKNM CDHIFMLMSN YAVNQQDGRL AQAATGVTRM  240
NKDNREKSLL DLIAMRTSSS DVSSTQELHD MKKGENCPML FGVSIGLKRS NVSVDEDDDL  300
RMPKVQNVKA EPSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-232511920125Heat shock factor protein 1
5d5u_B3e-232511429129Heat shock factor protein 1
5d5v_B3e-232511429129Heat shock factor protein 1
5d5v_D3e-232511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278594.13e-95PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C83e-84HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0K9NVC80.0A0A0K9NVC8_ZOSMR; Heat shock transcription factor
STRINGXP_010278594.11e-94(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-76HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]