PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma57g00590.1
Common NameZOSMA_57G00590
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 303aa    MW: 33456 Da    PI: 4.5344
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma57g00590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.71.6e-4816110397
            NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                       +drflPi+nvsrimk++lP nakisk+aket+qecvsef+sf+t+eas+kc+ ekrktingddllw++  l f+ y  plk+yl+kyre e+e
  Zosma57g00590.1  16 RNDRFLPITNVSRIMKRALPINAKISKEAKETIQECVSEFVSFITGEASEKCHSEKRKTINGDDLLWSMYRLDFDSYTIPLKIYLEKYRESERE 109
                      68******************************************************************************************99 PP

            NF-YB  97 k 97 
                      +
  Zosma57g00590.1 110 R 110
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4915131IPR009072Histone-fold
SuperFamilySSF471133.33E-3717130IPR009072Histone-fold
PfamPF008088.3E-252084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-174866No hitNo description
PRINTSPR006152.9E-176785No hitNo description
PRINTSPR006152.9E-1786104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVGSSSNSNP GRDASRNDRF LPITNVSRIM KRALPINAKI SKEAKETIQE CVSEFVSFIT  60
GEASEKCHSE KRKTINGDDL LWSMYRLDFD SYTIPLKIYL EKYRESERER SNNSPSQQTQ  120
QPQQAHQPQQ QRQPPNKWMP MDINGGSSSG NGLGIDNDRY AIPIGRNCNG YGNDYTGMMD  180
PTAHYIYPSV GETSYSMSNL GGGNYGMSGS SLYGGLDPSI YRSNNEVGSL NNEGEMFPTM  240
QEGFDSCIEE AGDLMAMFSS KIVEANENEV MGGDISSAIY QNYLYSDTLP TMEPPQPPSP  300
GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-3818105693NF-YB
4awl_B5e-3818105794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-3818105794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B4e-3818105592Transcription factor HapC (Eurofung)
4g92_B4e-3818105592Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NVR70.0A0A0K9NVR7_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-46nuclear factor Y, subunit B3