PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00610.1

Common Name

ZOSMA_57G00610

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 309aa MW: 34354.1 Da PI: 5.4866

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00610.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	156.6	4.2e-49	16	110	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 drflPianvsrimk++lP nakisk+aket+qecvsef+sf+t+eas+kc+ ekrktingddllw++ l f+ y plk+yl+kyre e+e Zosma57g00610.1 16 RSDRFLPIANVSRIMKRALPINAKISKEAKETIQECVSEFVSFITGEASEKCHSEKRKTINGDDLLWSMYRLDFDSYTIPLKIYLEKYRESERE 109 579*****************************************************************************************99 PP NF-YB 97 k 97 + Zosma57g00610.1 110 R 110 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-49	15	133	IPR009072	Histone-fold
SuperFamily	SSF47113	3.29E-37	18	128	IPR009072	Histone-fold
Pfam	PF00808	2.1E-25	20	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-17	48	66	No hit	No description
PRINTS	PR00615	3.0E-17	67	85	No hit	No description
PRINTS	PR00615	3.0E-17	86	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVGSSSNSNP GRDASRSDRF LPIANVSRIM KRALPINAKI SKEAKETIQE CVSEFVSFIT 60 GEASEKCHSE KRKTINGDDL LWSMYRLDFD SYTIPLKIYL EKYRESERER SNNSLSQQTQ 120 QPQQAHQPIQ QRQPPLAQQP PNKRMRMDIN GASSSGTGLG IDNDRYAIPT GRNCNDYGNN 180 YTGMMDPTAH YIYPTVGETS YSMSNLGGGN YGMSESSLYG GFDPSIYRSN NEFGSLKNGG 240 ERFPIMRERC DSRTEEAGDL MAMFSSKIDE ANKNEGMGGD ISSAIYQNYL YSDTLPTMEP 300 PQPPSPGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-38	18	105	6	93	NF-YB
4awl_B	9e-39	18	105	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	9e-39	18	105	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NXR8	0.0	A0A0K9NXR8_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-47	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma57g00610.1