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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zosma57g00630.1 | ||||||||
| Common Name | ZOSMA_57G00630 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 322aa MW: 35774.2 Da PI: 4.1347 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 150.6 | 3.2e-47 | 41 | 133 | 4 | 96 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
drflPianvsrimk++lP++akisk+aketvqecvsefisf+t+ea++kc+ ekrkt+ngddllw++ l f y plk+yl+kyre eg
Zosma57g00630.1 41 IDRFLPIANVSRIMKRALPTHAKISKEAKETVQECVSEFISFITGEAAEKCRSEKRKTVNGDDLLWSMNRLDFSPYTVPLKIYLEKYRESEGV 133
59***************************************************************************************9985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 2.2E-47 | 40 | 166 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 5.48E-37 | 42 | 165 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 9.7E-26 | 44 | 108 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| PRINTS | PR00615 | 2.7E-15 | 72 | 90 | No hit | No description |
| PRINTS | PR00615 | 2.7E-15 | 91 | 109 | No hit | No description |
| PRINTS | PR00615 | 2.7E-15 | 110 | 128 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 322 aa Download sequence Send to blast |
MPDETYKDDF NRIEGDSATN RPMILTRSAS NINPGNDVPS IDRFLPIANV SRIMKRALPT 60 HAKISKEAKE TVQECVSEFI SFITGEAAEK CRSEKRKTVN GDDLLWSMNR LDFSPYTVPL 120 KIYLEKYRES EGVKSNTFSS YQTLDSQQQQ LQQQQRQSPL AHQSQTNRMS MDTYGASSSG 180 TGLEIDNCNN DYGNDCTGMM DPNAHYAYPT IGEIGYSISN VVGGNYDLSE SSLYGGLDPS 240 ICRSNNEVGN LNNEGDMFSI MQEGIDTMTD EGDLMAKFSI KIGEENENDG TENDDIENDD 300 IENYLYDPDT SPKIEPPSPG K* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5g49_A | 1e-37 | 42 | 129 | 10 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012075209.1 | 3e-49 | nuclear transcription factor Y subunit B-3 | ||||
| TrEMBL | A0A0K9NXF6 | 0.0 | A0A0K9NXF6_ZOSMR; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G14540.1 | 9e-50 | nuclear factor Y, subunit B3 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Zosma57g00630.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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