PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00650.1

Common Name

ZOSMA_57G00650

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 110aa MW: 12110.8 Da PI: 8.2122

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	144.9	1.8e-45	24	108	3	87
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +d+flPianvsrimk++lP nakisk+aket+qecvsef+sf+t+eas+kc+ ekrktingddllw++ l f+ y plkvyl Zosma57g00650.1 24 SNDQFLPIANVSRIMKRALPVNAKISKEAKETIQECVSEFVSFITGEASEKCHSEKRKTINGDDLLWSMNRLDFDPYTIPLKVYL 108 589*********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-42	19	108	IPR009072	Histone-fold
SuperFamily	SSF47113	8.96E-33	26	108	IPR009072	Histone-fold
Pfam	PF00808	7.9E-27	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.6E-14	56	74	No hit	No description
PRINTS	PR00615	2.6E-14	75	93	No hit	No description
PRINTS	PR00615	2.6E-14	94	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MGLATNNPMV GSSSNSNSKR DAASNDQFLP IANVSRIMKR ALPVNAKISK EAKETIQECV 60 SEFVSFITGE ASEKCHSEKR KTINGDDLLW SMNRLDFDPY TIPLKVYLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-38	25	108	5	88	NF-YB
4awl_B	2e-38	25	108	6	89	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-38	25	108	6	89	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139999.1	1e-47	PREDICTED: nuclear transcription factor Y subunit B-3
Refseq	XP_022140566.1	5e-48	nuclear transcription factor Y subunit B-3-like, partial
Refseq	XP_023513391.1	1e-47	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	4e-46	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
Swissprot	Q69J40	9e-46	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A0K9NVS1	2e-75	A0A0K9NVS1_ZOSMR; Nuclear transcription factor Y subunit B-3
STRING	XP_004139999.1	5e-47	(Cucumis sativus)
STRING	XP_004154508.1	5e-47	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-48	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma57g00650.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]