PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00660.1

Common Name

ZOSMA_57G00660

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 321aa MW: 35723.3 Da PI: 4.3046

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00660.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	151.3	1.8e-47	41	133	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 drflPianvsrimk++lP++akisk+aketvqecvsefisf+t+ea++kc+ ekrkt+ngddllwa+ l f y plk+yl+kyre eg Zosma57g00660.1 41 IDRFLPIANVSRIMKRALPTHAKISKEAKETVQECVSEFISFITGEAAEKCRSEKRKTVNGDDLLWAMNRLDFSPYTVPLKIYLEKYRESEGV 133 59***************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.7E-48	40	165	IPR009072	Histone-fold
SuperFamily	SSF47113	8.85E-38	42	166	IPR009072	Histone-fold
Pfam	PF00808	1.4E-26	44	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-15	72	90	No hit	No description
PRINTS	PR00615	3.8E-15	91	109	No hit	No description
PRINTS	PR00615	3.8E-15	110	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MPEKTYKDDF NRIERDSATN RPMILTRSAS NINPGNDVPS IDRFLPIANV SRIMKRALPT 60 HAKISKEAKE TVQECVSEFI SFITGEAAEK CRSEKRKTVN GDDLLWAMNR LDFSPYTVPL 120 KIYLEKYRES EGVKSNTFSS YQTLDSQQQQ LQQQQRQSPL AHQLQTNRMS MDTYGASSSG 180 TGLEIDNCNN DYGNDCTGMM DPNAHYAYPT IGEIGYSISN VVGGYDLSES SLYGGLDPSI 240 CRSNNEVGNL NNEGDMFPTL QGGFDTMTDE GDLMAKFSIK IGEENENDGT ENDDIENDDI 300 KNYLYDPDTS PKIEPPSPGK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-37	42	129	5	92	Transcription factor HapC (Eurofung)
4g92_B	1e-37	42	129	5	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075209.1	3e-49	nuclear transcription factor Y subunit B-3
TrEMBL	A0A0K9NVE6	0.0	A0A0K9NVE6_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-50	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma57g00660.1