PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00670.1

Common Name

ZOSMA_57G00670

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 323aa MW: 35541.9 Da PI: 4.1596

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	150	4.9e-47	41	133	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 drflPianvsrimk++lP++akisk+aketvqecvsefisf+t+ea++kc+ ekrkt+ngddllw++ l f y plk+yl+kyre eg Zosma57g00670.1 41 IDRFLPIANVSRIMKRALPTHAKISKEAKETVQECVSEFISFITGEAAEKCRSEKRKTVNGDDLLWSMNRLDFSLYTVPLKIYLEKYRESEGV 133 59***************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-46	40	157	IPR009072	Histone-fold
SuperFamily	SSF47113	4.35E-35	42	150	IPR009072	Histone-fold
Pfam	PF00808	9.8E-26	44	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.3E-15	72	90	No hit	No description
PRINTS	PR00615	6.3E-15	91	109	No hit	No description
PRINTS	PR00615	6.3E-15	110	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MPEETYKDDF NGIEGDSATN KPMIQTRSAS NINPGNDVPS IDRFLPIANV SRIMKRALPT 60 HAKISKEAKE TVQECVSEFI SFITGEAAEK CRSEKRKTVN GDDLLWSMNR LDFSLYTVPL 120 KIYLEKYRES EGVKSNTFPS YQTLDSQQQQ QKQSPLAHES QTNLMSMDTY GASSSGTGLE 180 IDNCNNEYGN DYTGMMDPNA HYAYPAVGGT SYSISNVVGG YDLSESSLYG GLDPSICRSN 240 NEIGNLNNEG DMFPTLQGGF DTMTDEGDLM AKFSIKIGEE NENDGTENDA TKNDDIENDG 300 IENYLYDPDT SPKIEPPSSG KK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-37	42	129	10	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075209.1	1e-48	nuclear transcription factor Y subunit B-3
TrEMBL	A0A0K9NXS1	0.0	A0A0K9NXS1_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-49	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma57g00670.1