PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma57g00750.1

Common Name

ZOSMA_57G00750

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 213aa MW: 23781.7 Da PI: 7.7315

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma57g00750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+ +F+ + +Lk+H++ H Zosma57g00750.1 179 YTCVECNAVFTKPAYLKQHMQGH 201 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.42E-6	131	201	No hit	No description
SMART	SM00355	37	133	156	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.58	133	161	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.6E-4	177	202	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0047	179	201	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	9.6E-5	179	201	No hit	No description
PROSITE profile	PS50157	10.305	179	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	181	201	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTAIVLGDST KDHKRKLGDF EKDAEISPAT SSLESDTVFS MEVESNESML KCSSQDPKKR 60 QKIVAESTSE SADSELLEEV QANEVFFEGA ATISADSKMI NSKKNRLRVC DAEKDSKEGD 120 GKHKKSCRDI RRYYCEYCGI CRSKKTLITA HVLSNHKGKN QNKTNDAKDE NYGFGGRSYT 180 CVECNAVFTK PAYLKQHMQG HSIQIMSNYY TV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NVT0	1e-156	A0A0K9NVT0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17974	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	2e-17	transcription factor IIIA

Link Out ? help Back to Top
Phytozome	Zosma57g00750.1