PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma57g00760.1
Common NameZOSMA_57G00760
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 257aa    MW: 30319.2 Da    PI: 7.9783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma57g00760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.95.1e-084973123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     y+Cp   CgksF+ +s Lk+H ++H
  Zosma57g00760.1 49 YTCPefGCGKSFKYPSKLKKHESSH 73
                     9*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-648101No hitNo description
SMARTSM003553.0E-44973IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1754978IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-74969IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-570100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02179104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081104IPR007087Zinc finger, C2H2
SMARTSM0035595107128IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.54E-6120180No hitNo description
SMARTSM003550.013138163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.78138168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5139165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5166180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8169195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKRHVDDFHN EDDFQLHCHK EPENVDEFHN EEDFQLNSDK EVKEHKNLYT CPEFGCGKSF  60
KYPSKLKKHE SSHSKSTEVI CSEDGCMKSF SNKKCLKEHM YSCHRFIKCH VCETQQLKKN  120
FKRHQHMHEQ SSSPTEMLRC IFDGCCHKFS NKSNLKKHVK AVHLQERPFV CHFTGCGKKF  180
PFKHVRDNHE KSGIHVCVPH DLMEADEEEF RQHRRGGRKR TYPDVESLFR KRVAAPSETS  240
ALDDPQAYLR WLLNED*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931909.12e-82transcription factor IIIA
SwissprotQ84MZ49e-60TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9NVF10.0A0A0K9NVF1_ZOSMR; Uncharacterized protein
STRINGAquca_002_00921.17e-78(Aquilegia coerulea)
STRINGXP_008793643.11e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-55transcription factor IIIA