PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma581g00010.1
Common NameZOSMA_581G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 242aa    MW: 26998.5 Da    PI: 9.7367
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma581g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-151447134
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                      C +Cg t+T+lWR+gp  ++ LCnaCG ++r kg
  Zosma581g00010.1 14 CFHCGITTTSLWRNGPPEKPVLCNACGTRWRTKG 47
                      ****************88888**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.7E-12860IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.884848IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11850No hitNo description
CDDcd002029.32E-151356No hitNo description
PROSITE patternPS0034401439IPR000679Zinc finger, GATA-type
PfamPF003202.3E-131447IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-121448IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLPKAKSMRK QGPCFHCGIT TTSLWRNGPP EKPVLCNACG TRWRTKGILA NYMPLHAQGS  60
SLTTYKRKKS TTADNSKGKG KSKKELPSKH CRKKSALCEN KEDNDVDNTD WNNILDSHVN  120
HVVNGSSSTS ILPNSGRRQQ FDNSNISDGM SIPKERQLSS SDEKKKKPEH VEKLIKTLRD  180
IMNRQSVHVD EQDVLLYKND TSDVPQSTIE FLTGCILLKP PKYESEDLQV NNTGMGDNGQ  240
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NXA91e-179A0A0K9NXA9_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.12e-28GATA transcription factor 26