PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma59g00470.1
Common NameZOSMA_59G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 215aa    MW: 24874 Da    PI: 5.8865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma59g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l +++  +G g W+  a+  g++Rt+k+c++rw++yl
  Zosma59g00470.1 27 KGPWTMEEDLILMNYISIHGEGVWNNLAQSAGLKRTGKSCRLRWLNYL 74
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1780123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE +l++d+ +++G++ W++Iar m+ gRt++++k++w++
  Zosma59g00470.1  80 RGNITPEEKLLIIDLQARWGNR-WSKIARQMP-GRTDNEIKNYWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-221977IPR009057Homeodomain-like
PROSITE profilePS5129415.2642274IPR017930Myb domain
SuperFamilySSF466892.68E-2926121IPR009057Homeodomain-like
SMARTSM007171.0E-112676IPR001005SANT/Myb domain
PfamPF002493.8E-152774IPR001005SANT/Myb domain
CDDcd001676.90E-92974No hitNo description
PROSITE profilePS5129424.2475129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2278128IPR009057Homeodomain-like
SMARTSM007173.2E-1479127IPR001005SANT/Myb domain
PfamPF002491.2E-1480123IPR001005SANT/Myb domain
CDDcd001671.01E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDNKKACSSN SSSSSRTQKQ ESEVIRKGPW TMEEDLILMN YISIHGEGVW NNLAQSAGLK  60
RTGKSCRLRW LNYLRPDIRR GNITPEEKLL IIDLQARWGN RWSKIARQMP GRTDNEIKNY  120
WRTRIQKKEA AVVVLKQSEE ISIREEYDCY DDNNNNNIKY DQNSSMMQMT EMSMDQKSLP  180
PVYISPVDDD FLPDPSSAQS SDCLWGVDDL WSMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2391289127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585163.16e-73myb-related protein 305-like
SwissprotP813919e-70MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0K9NUL71e-157A0A0K9NUL7_ZOSMR; Uncharacterized protein
STRINGevm.model.supercontig_186.74e-71(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-69myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]