PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g00270.1
Common NameZOSMA_5G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CPP
Protein Properties Length: 566aa    MW: 62243.4 Da    PI: 8.315
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.56.4e-14121159241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+CnCk+skClk+YCeCf++g++C+  C+C +C N+ e
  Zosma5g00270.1 121 KQKQCNCKNSKCLKLYCECFSSGVYCDG-CNCVNCYNNIE 159
                     89**************************.********976 PP
2TCR51.61.9e-16205243139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN 
  Zosma5g00270.1 205 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNF 243
                     589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-15120160IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.506121245IPR005172CRC domain
PfamPF036387.5E-11122157IPR005172CRC domain
SMARTSM011141.0E-19205246IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.0E-13208243IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MTTPVEQGLP SSTSTSTPSD FPPKKLARQL DFNPFLGLPT VRPIDDTHRQ RQQPPPPPPP  60
LPASSSLPPQ RQLQMNQIQQ GTQMVPTTSA AISRSSISVK PESPKPRSRV MIDGKDGTPK  120
KQKQCNCKNS KCLKLYCECF SSGVYCDGCN CVNCYNNIEN ETSRREAIEL TLERNPHAFR  180
PKIASSPHAV RDNREVIGEL PLVGKHNKGC HCKKSGCLKK YCECFQANIL CSENCKCVDC  240
KNFDGSEERR SLFHGEHGNN MTYIQQAANA AITGAIGSSG YGSPPVSKRR KNQESLFSSS  300
IKEPAANHRL SQFLQGNLSK PSTSTQFGSV PLANAVTYAG LGSSKVTLRP LLADIIQPDD  360
VKELCKLLVV ESREIAKRFS SIEEKEKKQN AGQEECPKNP RESEMKELES QRAQNGDPSR  420
ETIAEKANAE QSGLGSSELQ KVERPMSPAT LALMCDEQEA MFMTTSASQN ACISSRLSST  480
QSMPEVYMEQ EKCVLTEFRD CLRKLVTYGR MKEQKYSSMA TKPEISNQQV QVGNSNNGST  540
AIKTEEAPQA SNAAPIMPKT ENMEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3012225411132Protein lin-54 homolog
5fd3_B2e-3012225411132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078441.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_024952904.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-155TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9NTR30.0A0A0K9NTR3_ZOSMR; Tesmin/TSO1-like CXC domain-containing protein
STRINGXP_006475649.10.0(Citrus sinensis)
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-141Tesmin/TSO1-like CXC domain-containing protein