PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma5g00940.1

Common Name

ZOSMA_5G00940

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 146aa MW: 16175.3 Da PI: 5.0433

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma5g00940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	144	3.4e-45	49	139	2	92
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 r qd +lPian+srim+k++P+ kiskd+k+++q cvsefisf+tseas kcq e+rkti+gddllwa+ lGf+dyv+plk+yl +yr+ Zosma5g00940.1 49 RPQDGHLPIANISRIMRKAVPETVKISKDSKDLIQTCVSEFISFITSEASLKCQTERRKTITGDDLLWAIEALGFQDYVNPLKLYLDRYRK 139 56999*************************************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.1E-43	46	140	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-34	51	140	IPR009072	Histone-fold
Pfam	PF00808	3.0E-24	55	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.9E-15	82	100	No hit	No description
PRINTS	PR00615	7.9E-15	101	119	No hit	No description
PRINTS	PR00615	7.9E-15	120	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MNFPVVSMED KSPGSSSRTS AGKFRISDEA EAEDEAETSE IGGSARGERP QDGHLPIANI 60 SRIMRKAVPE TVKISKDSKD LIQTCVSEFI SFITSEASLK CQTERRKTIT GDDLLWAIEA 120 LGFQDYVNPL KLYLDRYRKQ VINLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-38	49	139	3	93	NF-YB
4awl_B	2e-38	49	139	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-38	49	139	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872425.1	6e-45	nuclear transcription factor Y subunit B-3-like
Refseq	XP_015872426.1	6e-45	nuclear transcription factor Y subunit B-3-like
Refseq	XP_027366148.1	9e-45	nuclear transcription factor Y subunit B-1-like
Swissprot	Q9SLG0	6e-44	NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A0K9NTY5	1e-103	A0A0K9NTY5_ZOSMR; Nuclear transcription factor Y subunit B-1
STRING	XP_006485940.1	1e-43	(Citrus sinensis)
STRING	XP_006436200.1	1e-43	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.3	3e-46	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Zosma5g00940.1