PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma5g01690.1

Common Name

ZOSMA_5G01690

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 233aa MW: 26898.1 Da PI: 6.3569

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma5g01690.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.3	4.8e-43	5	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p GfrF Pt+eelv++yL++k+e++++++e+vi+ v++y++ePw+L++ + ++++++fF++ ++++a+g r++r+t+sgyWkatg+ Zosma5g01690.1 5 PCGFRFYPTEEELVSFYLRHKLENTRNDIERVIPVVEVYSFEPWQLRQvsgepN--IgKSEQCFFFCPMQQREAQGGRPTRTTASGYWKATGTPV 97 89*************************99***********85344332..2356699**************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s+ + +++g+kkt+vfy+g+ap+g kt+W m+ey+ Zosma5g01690.1 98 RVFSSsnTVQVIGIKKTMVFYHGKAPHGMKTEWKMNEYK 136 98655567**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-46	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	44.983	4	162	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSNIPCGFRF YPTEEELVSF YLRHKLENTR NDIERVIPVV EVYSFEPWQL RQVSGEPNIG 60 KSEQCFFFCP MQQREAQGGR PTRTTASGYW KATGTPVRVF SSSNTVQVIG IKKTMVFYHG 120 KAPHGMKTEW KMNEYKALRP DQDDANSFRL CNDFSLCRIY IKNGCLRSFD RRPAAATSAN 180 VTQEEHQAQE YIVEQEVDIS QHSIPSSNQG DYDDNFDPFE NMDWKRLFTS LT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-33	3	162	19	168	NAC domain-containing protein 19
3swm_B	4e-33	3	162	19	168	NAC domain-containing protein 19
3swm_C	4e-33	3	162	19	168	NAC domain-containing protein 19
3swm_D	4e-33	3	162	19	168	NAC domain-containing protein 19
3swp_A	4e-33	3	162	19	168	NAC domain-containing protein 19
3swp_B	4e-33	3	162	19	168	NAC domain-containing protein 19
3swp_C	4e-33	3	162	19	168	NAC domain-containing protein 19
3swp_D	4e-33	3	162	19	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776160.1	8e-81	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0K9NW77	1e-176	A0A0K9NW77_ZOSMR; NAC domain-containing protein 90
STRING	XP_008776160.1	3e-80	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-66	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Zosma5g01690.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]