PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g01940.1
Common NameZOSMA_5G01940
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 335aa    MW: 36150.3 Da    PI: 5.8286
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g01940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16219253135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + +Tp+WR gp g ktLCnaCG++y++ +l
  Zosma5g01940.1 219 CLHCDAQNTPQWRTGPMGAKTLCNACGVRYKSGRL 253
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-666306IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.426213249IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15213263IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-15215277No hitNo description
Gene3DG3DSA:3.30.50.103.1E-14216251IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.35E-13218269No hitNo description
PfamPF003203.0E-14219253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MKSPAEQQML MNNPLENENQ LLGMVEGFFD FSNEEEDGMV EDVATGEAEV EAKAGKSVDS  60
TTAITGVSSV VDFSSNSSGS GSAAGNGDLC HSDELLFLLD ELPDTTDWIS NIVDDSYSTE  120
DIENFQLISG VKSSSSSFTT ANTINSDLSE KPITARARSK RPRMAPLNWA SRIVQRPPTT  180
TAASMVTSSD LSDTPTPAMK LAKVVKKEII TTTADGRRCL HCDAQNTPQW RTGPMGAKTL  240
CNACGVRYKS GRLVPEYRPA ASPTFITTKH SNSHRKVLEL RRKNGVLQHH DQQLISTTTT  300
TPQLFLTHHP HPTTGPPSTA AAVARGGELW QQTI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924658.12e-67GATA transcription factor 12
SwissprotP697814e-56GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0K9NW990.0A0A0K9NW99_ZOSMR; GATA transcription factor
STRINGXP_008804627.12e-66(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-55GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]