PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g02140.1
Common NameZOSMA_5G02140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 251aa    MW: 27335.7 Da    PI: 4.6524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g02140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1864113255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Zosma5g02140.1  64 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 113
                     7*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-3264127IPR001471AP2/ERF domain
PfamPF008471.6E-1264113IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2164122IPR016177DNA-binding domain
PROSITE profilePS5103223.06464121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3164122IPR001471AP2/ERF domain
PRINTSPR003672.6E-106576IPR001471AP2/ERF domain
CDDcd000184.08E-3165123No hitNo description
PRINTSPR003672.6E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEVCSVQCLE QQTSSGDSVV LSSSPPSSPT STVQSTKTTA VAVNAKTSDV EEVVVLGKRT  60
RHKVYRGVRM RNWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDVAALS IKGDAAFLNF  120
PDLIDLLPRP TTQSPRDVQE AAAKAAFMDV SRPLTSSSSS TEIAAPLEEL GQIVELPSLD  180
SLECSSSSEF LFSDPLNCTN IDESWCFAPW MNAGSGSTGD EYKFCAPPSP FPEFALPTSF  240
DDTPLWDHHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18621261277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221967.18e-56PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0K9NWB90.0A0A0K9NWB9_ZOSMR; Dehydration-responsive element-binding protein 3
STRINGXP_008775170.16e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]