PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g02290.1
Common NameZOSMA_5G02290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 417aa    MW: 47569.7 Da    PI: 4.6334
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g02290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y+++ed+++++++ ws+ng+sfvvld+ ef++ +Lp+yFkh+nf+SF+RQLn+Y F+k++ e+         weF+++ F +g+k+l+++
  Zosma5g02290.1  10 FLLKTYDMIEDKSTDNIVCWSSNGSSFVVLDPPEFSRILLPTYFKHNNFSSFIRQLNTYRFRKIDPEK---------WEFANDDFIRGEKQLMKS 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Zosma5g02290.1  96 IHRQKP 101
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-54699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-32698IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-35699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEVGGGPAPF LLKTYDMIED KSTDNIVCWS SNGSSFVVLD PPEFSRILLP TYFKHNNFSS  60
FIRQLNTYRF RKIDPEKWEF ANDDFIRGEK QLMKSIHRQK PTHRHSLPPP STSGSDLERE  120
TLEAEIERLT REKNALLTQI LKVRQCLSDS HLQNLETRIK NMEQRQQNIT NFLTKALENP  180
AFVDNLLRLM MDAGSNDLSV IRKKRRRALP KNEDDNDDED DDDEEEDDVV YNFSCDDDDG  240
LNEGFRGSEF STHMFQQDFN SKLKLELSPT ILNTEDDCTD HAIGPFILPR KNSVSATSPW  300
HSSVMDSSDD VPCHLNLTLA SSSPSPLQFN NKMEIGNSEV NQASEEDLIK NNITKKTTSS  360
EEGGIHATAS SPPVVSMPFA RKNDLFWEQF LTDESNSHED REKNEESGDR YIKIVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2249920129Heat shock factor protein 1
5d5v_B2e-2249920129Heat shock factor protein 1
5d5v_D2e-2249920129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWF00.0A0A0K9NWF0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.19e-76HSF family protein