PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma61g00240.1
Common NameZOSMA_61G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 201aa    MW: 22976.7 Da    PI: 5.8088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma61g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-1972122256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+W +eIr p+    +  r++lg+f+taeeAa a+++ +++l+ge
  Zosma61g00240.1  72 VYRGVRRRR-WGKWISEIRLPR----SkSRVWLGTFDTAEEAALAYDREALRLRGE 122
                      69****777.**********84....25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3172130IPR001471AP2/ERF domain
PROSITE profilePS5103222.91972129IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2272129IPR016177DNA-binding domain
PfamPF008471.5E-1272122IPR001471AP2/ERF domain
SMARTSM003804.0E-3472135IPR001471AP2/ERF domain
PRINTSPR003671.1E-117384IPR001471AP2/ERF domain
CDDcd000185.37E-3273130No hitNo description
PRINTSPR003671.1E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MELPKKDVLV KSCQSPGVNQ NYRPILPFDQ MISFGGEHNM NGNKSDELLR HWREAVNPIS  60
SPKWSSSSEK NVYRGVRRRR WGKWISEIRL PRSKSRVWLG TFDTAEEAAL AYDREALRLR  120
GETAHLNFPE IINVGRDSNP TETSTIGRLK DKDYVTTEVQ NQSPMMTDFE NEIERVLEEE  180
AWVSAWGPGS SVWDNIGELP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2073135669ATERF1
3gcc_A2e-2073135669ATERF1
5wx9_A6e-2067135978Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592458.16e-36ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0K9NTC71e-145A0A0K9NTC7_ZOSMR; Ethylene-responsive transcription factor 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-33ERF family protein