PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma62g00220.1
Common NameZOSMA_62G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 284aa    MW: 32376.4 Da    PI: 6.7583
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma62g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35251172103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed+ +++++sw e++++fvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k ll+
  Zosma62g00220.1  25 FLTKTYQLVEDSYTDHIVSWGEDETTFVVWKPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGQKPLLS 109
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  Zosma62g00220.1 110 EIHRRKSS 117
                      *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3715108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAYLVEKCGE MVVSMDSQKS VPAPFLTKTY QLVEDSYTDH IVSWGEDETT FVVWKPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGQKPLLSE IHRRKSSQIS  120
QHYHQHHFYH DPMLSQTSFL TNEIPWDAHA QLQAPPIPLT STGVGVGVGV GEHHFLSTLS  180
EDNQRLRRRN TFLLSELTHM KKLYNDIIYF LQNHVSPVQP EQRSSPAPAA ATPLSLYGVN  240
SSRPMAETSL SDDQGVGVLR LFGVPLDGNS KKRLHLEGED TED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-221511711123Heat shock factor protein 1
5d8k_B5e-22211172108Heat shock factor protein 2
5d8l_B5e-22211172108Heat shock factor protein 2
5d8l_D5e-22211172108Heat shock factor protein 2
5d8l_F5e-22211172108Heat shock factor protein 2
5d8l_H5e-22211172108Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922077.11e-109heat stress transcription factor B-4b
SwissprotQ7XHZ01e-94HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A0K9NT810.0A0A0K9NT81_ZOSMR; Heat stress transcription factor B-4b
STRINGXP_008794230.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-80heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]