PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma63g00340.1
Common NameZOSMA_63G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 232aa    MW: 25736.8 Da    PI: 9.358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma63g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-173786255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +gr++AeIrdp     + +r +lg+f+tae+Aa a++ a++++ g
  Zosma63g00340.1 37 KYRGVRRRP-WGRFAAEIRDPA----SkQRRWLGSFDTAEQAAVAYDVAAREMQG 86
                     8********.**********83....25999*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-213795IPR016177DNA-binding domain
SMARTSM003801.9E-3137101IPR001471AP2/ERF domain
PROSITE profilePS5103222.553794IPR001471AP2/ERF domain
CDDcd000186.17E-303793No hitNo description
PfamPF008471.9E-103786IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-293794IPR001471AP2/ERF domain
PRINTSPR003675.5E-93849IPR001471AP2/ERF domain
PRINTSPR003675.5E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEAVFSDGAA RSEKRRRRRK SAKVEEVTEI TCKETVKYRG VRRRPWGRFA AEIRDPASKQ  60
RRWLGSFDTA EQAAVAYDVA AREMQGLKAR TNFTYPCFIP SSDVTSDLYL RNASSHLCHH  120
YRSTNGGCDS GGSVKIGDKT SKVISTSGSG LLEEIVYRFF PKQEKHETGL ILDDKLISAS  180
SSPQVCHNSF YSPETNQDSF PVVSAGRSSV LENFSAYPEL FEIVSSKVAS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-183893359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318KRRRRR
21319KRRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NV191e-171A0A0K9NV19_ZOSMR; Uncharacterized protein
STRINGXP_004161084.12e-33(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-25DORNROSCHEN-like