PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma64g00560.1

Common Name

ZOSMA_64G00560

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 159aa MW: 17761.9 Da PI: 8.2372

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma64g00560.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.2e-10	56	96	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P + K++ +++Le+A++Y+k L Zosma64g00560.1 56 ARERRHRISDRFKILQSLVPGgN------KMDTVSMLEEAIHYVKFL 96 699***************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.142	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-14	52	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-12	53	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.61E-13	53	100	No hit	No description
SMART	SM00353	4.8E-12	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	56	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MGMEAGGGPQ RQSYPWFQQE ELPSYVGREG NRMRNGRRGS GGGGTKLSTD PQSVAARERR 60 HRISDRFKIL QSLVPGGNKM DTVSMLEEAI HYVKFLKTQI WLHHAIMGNI NPSPSTSYPP 120 PSFSLPPPQL PPYDNHSLPP FPDQCCQWSF QSEDDGFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027351330.1	2e-42	transcription factor LAX PANICLE 1
Swissprot	Q9M041	7e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A0K9NSS7	1e-114	A0A0K9NSS7_ZOSMR; Uncharacterized protein
STRING	Gorai.012G117300.1	1e-37	(Gossypium raimondii)
STRING	XP_010264777.1	5e-38	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8553	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-29	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Zosma64g00560.1

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]