PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma65g00020.1
Common NameZOSMA_65G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 261aa    MW: 27713.4 Da    PI: 8.7763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma65g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-2095144255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++ a++ ++g
  Zosma65g00020.1  95 KYRGVRQRP-WGKWAAEIRDPR----KaTRVWLGTFETAEDAARAYDTAALGFRG 144
                      8********.**********94....36**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-3394153IPR001471AP2/ERF domain
PROSITE profilePS5103225.31795152IPR001471AP2/ERF domain
PfamPF008474.2E-1395144IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2395153IPR016177DNA-binding domain
SMARTSM003803.1E-3795158IPR001471AP2/ERF domain
CDDcd000183.57E-3195154No hitNo description
PRINTSPR003672.7E-1296107IPR001471AP2/ERF domain
PRINTSPR003672.7E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVTRYTPAGE LSAMITALTN VVSGETAGIS THSTDGRKKR GRGDDYEDQI EHDTAIFNND  60
VSTHVLTPTV SGAMAGEPSS LPSPPSLSES PLQRKYRGVR QRPWGKWAAE IRDPRKATRV  120
WLGTFETAED AARAYDTAAL GFRGNKAKLN FPENVRLGST ARTPLLTPTP PSTGIFQGSS  180
SDHARDYIEY SRILQSSDVT SASLFTQMGY SSSSSPSPSP SASSMQSHST TPGGAETHER  240
GDASRRSSSG GYPPPPSSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-23951591479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503984.11e-39ethylene-responsive transcription factor ABR1-like
RefseqXP_022950524.14e-39ethylene-responsive transcription factor ABR1
TrEMBLA0A0K9NUF80.0A0A0K9NUF8_ZOSMR; Uncharacterized protein
STRINGXP_004503984.15e-39(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-27related to AP2 6