PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma65g00950.1
Common NameZOSMA_65G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 239aa    MW: 26266.8 Da    PI: 11.1901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma65g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-133683355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     ++h+e+ErrRR+riNs +++Lr+l+P+       K++Ka+ L +++  +++Lq
  Zosma65g00950.1 36 KSHSEAERRRRERINSHLSTLRRLIPNT-----SKMEKAALLAEVISQLRQLQ 83
                     58*************************7.....6*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7133382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-43685No hitNo description
PfamPF000101.3E-103683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-133790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-133794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-123988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDFMGFRGGA GLYQSVGRRN GHVGGVAEVR AALALKSHSE AERRRRERIN SHLSTLRRLI  60
PNTSKMEKAA LLAEVISQLR QLQTAAAEVR RRWNVPSDID EITVEEGERV ESSGSSSSTV  120
RSIKATICCD DRPDLLADLK KALESILRLK TVSAEISTVG CRIRFVFILV TTRTSTTTSQ  180
EQEPAAGVIT RSVQQTLKCA LARISSSSSH RRRQNQPDFF SARNPRRISP LESSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NSL41e-170A0A0K9NSL4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-27basic helix-loop-helix 32