PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma66g00010.1

Common Name

ZOSMA_66G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 122aa MW: 14321.6 Da PI: 10.2922

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma66g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.7	4.7e-19	42	109	54	113
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgra 113 ++ewyfFs++dkky+ g+r nra+ g+Wk+tg+dk+++ + +++ ++++ktLvfy gr+ Zosma66g00010.1 42 PQNEWYFFSHKDKKYPIGTRINRAMVVGFWKTTGRDKPIYLSggrnvidgGHKRIWMRKTLVFYMGRT 109 467************************************9666666655555********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.518	1	121	IPR003441	NAC domain
SuperFamily	SSF101941	1.09E-16	40	111	IPR003441	NAC domain
Pfam	PF02365	4.0E-7	42	109	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MGSQRYHITL TRYTYTSISI YIHTYKVPII MDVERCRIGS GPQNEWYFFS HKDKKYPIGT 60 RINRAMVVGF WKTTGRDKPI YLSGGRNVID GGHKRIWMRK TLVFYMGRTC SYWTEISLDH 120 A*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436417.1	5e-31	NAC domain-containing protein 43
Refseq	XP_027063205.1	5e-31	NAC domain-containing protein 76-like
Refseq	XP_027119768.1	5e-31	NAC domain-containing protein 76-like
Refseq	XP_027172345.1	5e-31	NAC domain-containing protein 76
Swissprot	Q9MA17	1e-29	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A0K9NU44	9e-85	A0A0K9NU44_ZOSMR; Uncharacterized protein
STRING	Sb10g002120.1	2e-30	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	5e-32	NAC family protein

Link Out ? help Back to Top
Phytozome	Zosma66g00010.1

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]