PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma67g00070.1
Common NameZOSMA_67G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 237aa    MW: 26651.3 Da    PI: 9.5988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma67g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.1e-1952145189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                      +fY +YA++ GF+vrk ++ ++  n+e +kr ++C k+g ++++         ++k+ r+  + rtgC+a++++k+++ +gkw+v+++++ HnH
  Zosma67g00070.1  52 QFYFKYAHHKGFNVRKGSTVRK--NNELKKRLLYCCKQGLSATKIPLhanlsnSSKKPRKIRNPRTGCEASITLKLNEkTGKWNVHHFNEVHNH 143
                      6****************98877..8889***********9998866577887677777788899*************99*************** PP

             FAR1  88 el 89 
                      +l
  Zosma67g00070.1 144 DL 145
                      99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1752146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLAISDGAHS ENIPATVKSV PIGQLSMVDS TKIESTVPYI GQSFDSVDEG EQFYFKYAHH  60
KGFNVRKGST VRKNNELKKR LLYCCKQGLS ATKIPLHANL SNSSKKPRKI RNPRTGCEAS  120
ITLKLNEKTG KWNVHHFNEV HNHDLIISSK QGFVIIKKEV PTHCRNLIHD METTNNSPAQ  180
KERGVSSELC KLYSRYSNLA NVSKDAEVDA MNYLLEGIEY LEQKHEQPKG KEVKNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRW61e-176A0A0K9NRW6_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5