PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma67g00100.1
Common NameZOSMA_67G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 406aa    MW: 44875.1 Da    PI: 7.4288
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma67g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.91.6e-13237328390
             FAR1   3 YneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++A+++ Fsvr +++++    ++ ++i   +  Csk+g+++     t+ ++r+++++r gC a++k k+ + ++kw+ ++++l+HnH+++
  Zosma67g00100.1 237 YYDFASSIEFSVRLESTQNIldkETGQKILVMKRLCSKQGSPNLILPPTNGTSRKNSVSRYGCLANIKFKRIDrSDKWVTDSVNLDHNHPFT 328
                      999***********998876765677789999999********9999999**********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-10237328IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTSPTSFGNQ HRPISLQVSP NTNSIFVTPL PYRSQQFTYD HTNTFCNVSL KFHFNSPQCQ  60
KNANTKPSNV VFSTPLDPDA PASNIVQSDF VQCTSAEIKE SPANMSYGTA KIPNSINCQF  120
NFPHCQTTVN PIDSSVNVSR SLDPDNVCCT FFDSENVQSA SADIKESSVQ IPTNSANVSY  180
GTAKTPDNHL KRKFSSTGGY PTSPNHENGS SGYSQSSKPC PIVGEVFLSY EMVVQSYYDF  240
ASSIEFSVRL ESTQNILDKE TGQKILVMKR LCSKQGSPNL ILPPTNGTSR KNSVSRYGCL  300
ANIKFKRIDR SDKWVTDSVN LDHNHPFTTP SKIRYLPINQ SISHTSKILF SSLADVNVPV  360
SQQTAYFSNQ LDGPENMGCM TLDINNMVRD DRIDLKNYDV DLISK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562140.0AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRW20.0A0A0K9NRW2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-10FAR1-related sequence 11