PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma67g00540.1

Common Name

ZOSMA_67G00540

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

GRF

Protein Properties

Length: 361aa MW: 40605.5 Da PI: 8.7217

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma67g00540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	5.9e-25	70	114	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ Zosma67g00540.1 70 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKLVET 114 79***************************************9986 PP
2	QLQ	60.2	6e-21	9	44	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l++Ky++a+ PvPp+Ll++i+k Zosma67g00540.1 9 MFTALQWQELEHQALIFKYMMAGIPVPPDLLLPIRK 44 7*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-11	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.156	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-15	10	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.141	70	114	IPR014977	WRC domain
Pfam	PF08879	5.0E-21	71	113	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGGGGCRPMF TALQWQELEH QALIFKYMMA GIPVPPDLLL PIRKSFEAMA ARFYHHPTMG 60 YCSLYGKKVD PEPGRCRRTD GKKWRCSKDA YPDSKYCERH MHRGRNRSRK LVETQTLFQS 120 HSQSSSSTVT NPTSNDRCNV VSGGTRESFP RSIPVQSIAA SHAQTSDSGP NLTQLQMDRG 180 SYSVMDRKDY RYLNVVKSEK DEHSIFSGAT SANPRGLGID PSTDNTWHMI PSQVDLFPLS 240 KGRNESIMPI NNTQLHSLHG LEQDPMNSLS RQHQHCLFGN EFGCTDGIKQ ENQSLQLFFD 300 EWPKARDSWS ELKHERSNRT SFSTTQLSMS IPMASSDFST TSSRSPNGTQ PSSILKKIDE 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGGGGCRPMF TALQWQELEH QALIFKYMMA GIPVPPDLLL PIRKSFEAMA ARFYHHPTMG  60
YCSLYGKKVD PEPGRCRRTD GKKWRCSKDA YPDSKYCERH MHRGRNRSRK LVETQTLFQS  120
HSQSSSSTVT NPTSNDRCNV VSGGTRESFP RSIPVQSIAA SHAQTSDSGP NLTQLQMDRG  180
SYSVMDRKDY RYLNVVKSEK DEHSIFSGAT SANPRGLGID PSTDNTWHMI PSQVDLFPLS  240
KGRNESIMPI NNTQLHSLHG LEQDPMNSLS RQHQHCLFGN EFGCTDGIKQ ENQSLQLFFD  300
EWPKARDSWS ELKHERSNRT SFSTTQLSMS IPMASSDFST TSSRSPNGTQ PSSILKKIDE  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269\|PubMed:24532604, ECO:0000269\|PubMed:26187814, ECO:0000269\|PubMed:26936408, ECO:0000269\|PubMed:27107174, ECO:0000269\|PubMed:27250747, ECO:0000269\|PubMed:27250749, ECO:0000305\|PubMed:26187814, ECO:0000305\|PubMed:27107174, ECO:0000305\|PubMed:27250747, ECO:0000305\|PubMed:27250749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269\|PubMed:26187814, ECO:0000269\|PubMed:26936408, ECO:0000269\|PubMed:27107174, ECO:0000269\|PubMed:27250747}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681915	1e-42	LN681915.1 Cucumis melo genomic scaffold, anchoredscaffold00070.
GenBank	LN713265	1e-42	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255823.1	1e-142	PREDICTED: growth-regulating factor 4-like
Swissprot	Q6ZIK5	2e-94	GRF4_ORYSJ; Growth-regulating factor 4
TrEMBL	A0A0K9NS15	0.0	A0A0K9NS15_ZOSMR; Growth-regulating factor 5
STRING	XP_010255823.1	1e-141	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-46	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Zosma67g00540.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Hu J, et al. A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice. Mol Plant, 2015. 8(10): p. 1455-65 [PMID:26187814] Sun P, et al. OsGRF4 controls grain shape, panicle length and seed shattering in rice. J Integr Plant Biol, 2016. 58(10): p. 836-847 [PMID:26936408] Li S, et al. The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice. Plant Biotechnol. J., 2016. 14(11): p. 2134-2146 [PMID:27107174] Che R, et al. Control of grain size and rice yield by GL2-mediated brassinosteroid responses. Nat Plants, 2015. 2: p. 15195 [PMID:27250747] Duan P, et al. Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice. Nat Plants, 2015. 2: p. 15203 [PMID:27250749]