PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma67g00700.1
Common NameZOSMA_67G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 144aa    MW: 16190.4 Da    PI: 9.2379
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma67g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.96.7e-1837127190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fY +YA ++GFsvrks++   + +g +t+rt+vCsk+g+ +        + k+ r+ ++ r +C+a+++   + ++ w vt + + HnH la
  Zosma67g00700.1  37 NFYYNYAGNLGFSVRKSTTAADHSQG-FTRRTLVCSKQGSINVVILPtntSLKKPRKIQNPRSECEARITFAIK-ENIWIVTACITSHNHVLA 127
                      6*****************99996666.************9986543332256777888899**********999.9**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1637127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MESAILESTE DHFEPSITNN EHPSKDMTFK TLEDVENFYY NYAGNLGFSV RKSTTAADHS  60
QGFTRRTLVC SKQGSINVVI LPTNTSLKKP RKIQNPRSEC EARITFAIKE NIWIVTACIT  120
SHNHVLATPS KRRFLTSKLA IEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NS321e-102A0A0K9NS32_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-10FAR1-related sequence 11