PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00200.1
Common NameZOSMA_68G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 199aa    MW: 22158.7 Da    PI: 6.0788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18951145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++WT eEd++l++ +++ G++ W++Ia +++ gRt++ +k++w+
  Zosma68g00200.1  9 KDNWTVEEDKILIKIHNKVGNK-WAKIATHIP-GRTENAIKNHWN 51
                     689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.657158IPR017930Myb domain
SMARTSM007171.5E-16856IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-16857IPR009057Homeodomain-like
PfamPF002499.1E-17951IPR001005SANT/Myb domain
CDDcd001673.02E-141154No hitNo description
Gene3DG3DSA:1.10.10.605.2E-191152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MNYLLYMQKD NWTVEEDKIL IKIHNKVGNK WAKIATHIPG RTENAIKNHW NATKRRQSTP  60
RINSRKTNIE LNRTSLLQDY IQGIPIAHED LEPSSVVDQT PTATLHPQYS SSAITATAAS  120
HDTLLPINHA ESSNSSSLFY NLDMMNQFLE KNDDASDNDL VIQKSGWEAV LAFEKEIADA  180
AFGNSSNVVD LHAPSSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-16557153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-16557153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NS551e-144A0A0K9NS55_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2549955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-25myb domain protein 98