PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00220.1
Common NameZOSMA_68G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 448aa    MW: 50058.2 Da    PI: 4.1674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-18127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WTteEde+l +av++ G + W tIar +  gR++kqc++rw+++l
  Zosma68g00220.1 127 RGQWTTEEDEKLMQAVRENGLKKWPTIARALK-GRSGKQCRERWYNHL 173
                      89*****************************9.*************97 PP
2Myb_DNA-binding52.31.3e-16180223247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + WT+eEd  l++a+k++G+  W+ I ++++ gRt++++k++w++ 
  Zosma68g00220.1 180 DGWTEEEDRVLIRAHKMMGNC-WSEIVKCLP-GRTENSVKNHWNTT 223
                      56*****************99.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.591122177IPR017930Myb domain
SuperFamilySSF466891.8E-30125220IPR009057Homeodomain-like
SMARTSM007172.1E-15126175IPR001005SANT/Myb domain
PfamPF002492.1E-16127173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-25128180IPR009057Homeodomain-like
CDDcd001672.37E-15130173No hitNo description
SMARTSM007172.6E-17178226IPR001005SANT/Myb domain
PROSITE profilePS5129420.591178228IPR017930Myb domain
PfamPF002492.2E-14181223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-22181228IPR009057Homeodomain-like
CDDcd001671.28E-14182224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEHATSSDPV PVLLDDGSSR HVDTSILVAN EEYIASIYPI GSSTADTSTC EVNGYTGMAN  60
LQQPPISMVD DAMAPDDPGW ISPEINPSDA NVCEFSESTL LQEILHMNKR CMRIINSVRN  120
QKLEIIRGQW TTEEDEKLMQ AVRENGLKKW PTIARALKGR SGKQCRERWY NHLQPNIKKD  180
GWTEEEDRVL IRAHKMMGNC WSEIVKCLPG RTENSVKNHW NTTKRRQLSR RPYRNTRNSY  240
NSQLLLNYIR SLNLSDDQDL NLNSSFLNTR AVDNDPKESA EVEVEAQRPT SVEDIEFDYS  300
LLPDFADVYS IEDVLGNDFL NDDFLLDGLE WDQLGTDGTN NNLNLVNAAT QPNPESYADI  360
DAAAATQPNP ESYADIDAAV TQPNPESYAD IDAAATQPTP ESYAEINAAA VYSVQSAHID  420
MNINHPIPPL TDEEDIDLME MNSASTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-431242281105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NU010.0A0A0K9NU01_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-50myb domain protein 118