PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00670.1
Common NameZOSMA_68G00670
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 167aa    MW: 18352.3 Da    PI: 10.5634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-1987136255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+W+AeIrdp    +r +r +lg+f tae+Aa+a+++a+  ++g
  Zosma68g00670.1  87 NYRGVRQRP-WGKWAAEIRDP----QRaRRKWLGTFNTAEDAARAYDRAAIGFRG 136
                      59*******.**********9....258*********************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.39587144IPR001471AP2/ERF domain
SMARTSM003805.0E-3687150IPR001471AP2/ERF domain
PfamPF008471.0E-1287135IPR001471AP2/ERF domain
CDDcd000185.42E-2387144No hitNo description
SuperFamilySSF541713.07E-2287145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-3287145IPR001471AP2/ERF domain
PRINTSPR003673.6E-118899IPR001471AP2/ERF domain
PRINTSPR003673.6E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSSLPLHVLQ SNLLLPEEEE AIIVSALAHV ISDRHTVSPV INLSALANLP VPETCSCCFI  60
EGCLGCDFFL ETAQMMKKKK KKRIKKNYRG VRQRPWGKWA AEIRDPQRAR RKWLGTFNTA  120
EDAARAYDRA AIGFRGARAK LNFPTLPLPT TTAASSGTTA SRKLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2386144160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2386144463ATERF1
3gcc_A6e-2386144463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682KKKKKKR
27685KKKKKKRIKK
37785KKKKKRIKK
47885KKKKRIKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625060.13e-46PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ061e-35EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0K9NU471e-120A0A0K9NU47_ZOSMR; Uncharacterized protein
STRINGBo3g168910.11e-45(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-32redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]