PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma69g00740.1
Common NameZOSMA_69G00740
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 248aa    MW: 27984.9 Da    PI: 9.0414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma69g00740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.51.6e-3791431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka...eekewyfFs..krdkkyatgkrknratksgyWkat 86 
                      lppGfrFhPtdeelvv+yL++k+ + +l++  +i++v++++++PwdLp +  +      e+ke y F   +   + +++k ++r++ sgyWk+t
  Zosma69g00740.1   9 LPPGFRFHPTDEELVVQYLRRKALSYPLPA-WIIPDVHLNQYNPWDLPlNsaA--VgcgEKKERYLFNyyRGGGARSNKKVSRRVAGSGYWKST 99 
                      79***************************9.78***************54552..133344466655510555566677788889********* PP

              NAM  87 gkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      gk+k ++++ +++++g+k+++vfy g + +  ++tdWv+hey+l
  Zosma69g00740.1 100 GKEKMIVVEpEKQVIGMKRVMVFYGGiKPSVISRTDWVLHEYSL 143
                      ******99878999**********994555568*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-425189IPR003441NAC domain
PROSITE profilePS5100542.1929189IPR003441NAC domain
PfamPF023656.9E-2210143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENQKVIKLP PGFRFHPTDE ELVVQYLRRK ALSYPLPAWI IPDVHLNQYN PWDLPLNSAA  60
VGCGEKKERY LFNYYRGGGA RSNKKVSRRV AGSGYWKSTG KEKMIVVEPE KQVIGMKRVM  120
VFYGGIKPSV ISRTDWVLHE YSLIVSPKKN SNGDLNAAGF ANNNMLSPTT TSSQVTYTEG  180
WVLCRVFQKK SKVTDMMKKD SNLMESRSSV CNFSNMETEI MESSCVTQDS NKEEEVEDEQ  240
SSITISA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-35719115167NO APICAL MERISTEM PROTEIN
1ut4_B8e-35719115167NO APICAL MERISTEM PROTEIN
1ut7_A8e-35719115167NO APICAL MERISTEM PROTEIN
1ut7_B8e-35719115167NO APICAL MERISTEM PROTEIN
3swm_A9e-35719118170NAC domain-containing protein 19
3swm_B9e-35719118170NAC domain-containing protein 19
3swm_C9e-35719118170NAC domain-containing protein 19
3swm_D9e-35719118170NAC domain-containing protein 19
3swp_A9e-35719118170NAC domain-containing protein 19
3swp_B9e-35719118170NAC domain-containing protein 19
3swp_C9e-35719118170NAC domain-containing protein 19
3swp_D9e-35719118170NAC domain-containing protein 19
4dul_A8e-35719115167NAC domain-containing protein 19
4dul_B8e-35719115167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929607.15e-53NAC domain-containing protein 83
TrEMBLA0A0K9NRH70.0A0A0K9NRH7_ZOSMR; NAC domain protein
STRINGXP_008791093.17e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-46NAC domain containing protein 83