PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g00550.1
Common NameZOSMA_6G00550
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26126.3 Da    PI: 10.1051
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g00550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCd++ av ifs++gkl eys+
  Zosma6g00550.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDVQLAVAIFSTKGKLSEYST 59
                    79***********************************************96 PP
2K-box51.93.2e-18901431770
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                      + e +kL +++e+L + qR+++GedL+++s +eL +LeqqL+++l kiR +K+
  Zosma6g00550.1  90 RSFECTKLMNKVESLHKIQRNIIGEDLDDMSSRELYSLEQQLQNGLYKIRMQKS 143
                     45699**********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.997161IPR002100Transcription factor, MADS-box
CDDcd002652.46E-35272No hitNo description
SuperFamilySSF554557.85E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.70887205IPR002487Transcription factor, K-box
PfamPF014863.6E-1690194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD VQLAVAIFST KGKLSEYSTD  60
SNMANILERY EKRYGEKYLH QPKIQYEGQR SFECTKLMNK VESLHKIQRN IIGEDLDDMS  120
SRELYSLEQQ LQNGLYKIRM QKSSGQLHIH AVLLISDFNI NFMMQNHRIL DLIANLQTKG  180
NLIQNENEAL QKMIITEKAA QMEREKLKAT KNLPHIPNLN LACLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17170169MEF2C
5f28_B5e-17170169MEF2C
5f28_C5e-17170169MEF2C
5f28_D5e-17170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408635.13e-54PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S77e-52AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0K9NQV41e-163A0A0K9NQV4_ZOSMR; Floral homeotic protein APETALA 1
STRINGGSMUA_Achr7P00460_0011e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]