PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g01090.1
Common NameZOSMA_6G01090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 134aa    MW: 14907.1 Da    PI: 10.5422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g01090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000176183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C+k F ++  L  H++ H
  Zosma6g01090.1 61 FSCAYCDKKFLNSQALGGHQNAH 83
                    89***************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.45E-75889No hitNo description
Gene3DG3DSA:3.30.160.603.6E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5526188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MNGMEEADHI IKRKEPVLEL GLSSGGGTSS RGVELIRVME LNLIGKRLGE DSKVKIETRV  60
FSCAYCDKKF LNSQALGGHQ NAHKRERTLA KRNHRASSSS SSINLIMYKK QEKYQLQSMS  120
NYRNVFGKKG AGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304721.21e-19zinc finger protein 1
TrEMBLA0A0K9NRG22e-92A0A0K9NRG2_ZOSMR; Uncharacterized protein
STRINGPOPTR_0003s17900.15e-19(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-16zinc finger protein 3