PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g01650.1
Common NameZOSMA_6G01650
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 280aa    MW: 31294.5 Da    PI: 9.9072
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g01650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.8e-2172131357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eq+  Le+l+++  r+p+ae+++e+A kl    +++ ++V++WFqN++a++++
  Zosma6g01650.1  72 SRWNPTNEQISLLETLYKQgVRTPTAEQIQEIAGKLreygSIEGKNVFYWFQNHKARQRQ 131
                     8*****************99**************************************96 PP
2Wus_type_Homeobox112.71.8e-3671133365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt+eQi +Le+lyk+G+rtP++e+iq+i+ +L+eyG ie+kNVfyWFQN+kaR+rqkq
     Zosma6g01650.1  71 NSRWNPTNEQISLLETLYKQGVRTPTAEQIQEIAGKLREYGSIEGKNVFYWFQNHKARQRQKQ 133
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-1364137IPR009057Homeodomain-like
PROSITE profilePS5007111.59667132IPR001356Homeobox domain
SMARTSM003893.1E-769136IPR001356Homeobox domain
PfamPF000462.2E-1871131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-872131IPR009057Homeodomain-like
CDDcd000862.80E-673133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSGSKPTPS RTHGPPTLAC TNNQLPPSLS SYKYMQRKRK SDHNRHCMEE EEATMRRSSS  60
GSGSNASSVP NSRWNPTNEQ ISLLETLYKQ GVRTPTAEQI QEIAGKLREY GSIEGKNVFY  120
WFQNHKARQR QKQKQETMAC FNRLLRKTTL SVSPVSLLPH QRAIASLPPP VCANVPFVCG  180
PYYFPHGFYP HYPQVVLPAA TVQNRSREVP ESQRIRKEYS SGVCSVDDGR KNTQQTLQLF  240
PLHPTGDLLV EKTGKAVVGG ITKGNEDYEV PVPTVIKLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540QRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281161.19e-55PREDICTED: WUSCHEL-related homeobox 2
TrEMBLA0A0K9NT590.0A0A0K9NT59_ZOSMR; WUSCHEL-related homeobox 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-40WUSCHEL related homeobox 2