PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g01860.1
Common NameZOSMA_6G01860
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 87aa    MW: 9742.7 Da    PI: 5.7404
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g01860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.22.3e-075085138
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38
                    +fY +YA + GF+vr+s+sk+   +    +++fvCsk+
  Zosma6g01860.1 50 QFYFSYAGHSGFDVRRSSSKYY--DSVLQTKKFVCSKQ 85
                    6*****************9998..88899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDDNLQTSIF VDSPSRNTNT LSLVNSSQYS PDPPTPFVGQ IFPDLESGRQ FYFSYAGHSG  60
FDVRRSSSKY YDSVLQTKKF VCSKQE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NR657e-56A0A0K9NR65_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.13e-07FAR1-related sequence 11