PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g02120.1
Common NameZOSMA_6G02120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33407.9 Da    PI: 4.4751
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g02120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-1977128556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++  +q+ +Le+ Fe+++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Zosma6g02120.1  77 RRLGVHQVSALEKSFEMENKLEPERKVKLARELGLQPRQVAVWFQNRRARWK 128
                     467789*********************************************9 PP
2HD-ZIP_I/II122.71.8e-3974165192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  +qv++LE+sFe+e+kLeperKv+lareLglqprqvavWFqnrRAR+k kqlE+dy +Lk++yd+lk  ++++++++e+L  +++
  Zosma6g02120.1  74 EKKRRLGVHQVSALEKSFEMENKLEPERKVKLARELGLQPRQVAVWFQNRRARWKIKQLERDYGFLKTEYDSLKLLHQTIRRDNEALLLQID 165
                     69************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.5270130IPR001356Homeobox domain
SMARTSM003891.3E-1873134IPR001356Homeobox domain
CDDcd000863.59E-1775131No hitNo description
SuperFamilySSF466892.53E-1875140IPR009057Homeodomain-like
PfamPF000463.7E-1676128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1981136IPR009057Homeodomain-like
PRINTSPR000319.0E-6101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000319.0E-6110126IPR000047Helix-turn-helix motif
PfamPF021833.3E-13130171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKKPSRFVES TAEAEHHRRK TAAAICVSAT EDTLSLDDER VGALQAILGG VGGEEDGEEE  60
AAVGVGDGAS GLGEKKRRLG VHQVSALEKS FEMENKLEPE RKVKLARELG LQPRQVAVWF  120
QNRRARWKIK QLERDYGFLK TEYDSLKLLH QTIRRDNEAL LLQIDELKAK VGGDETTVKE  180
EVEEKKTMEV EEDAEESLLP PLIYKDGSSD SDTSAILNEE GVSGISSSST QNLRQPNQNP  240
VVSMDVEDGE NKEGRGIYFY YQYNQQQEVE HEEHDFLNGS GSIFSDENPP TLSWYCSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130RRARWKIKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019463617.12e-62PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J12e-53ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0K9NR850.0A0A0K9NR85_ZOSMR; Homeobox-leucine zipper protein ATHB-16
STRINGPOPTR_0005s07290.15e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-51homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]