PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g02230.1
Common NameZOSMA_6G02230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 266aa    MW: 29363.8 Da    PI: 10.2643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g02230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-18118172256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k+ ++tk+q + Le+ F++++++s +++  LAk l+L  rqV vWFqNrRa+ k
  Zosma6g02230.1 118 KKKLRLTKDQSTLLERSFKEHSTLSPKQKLALAKALDLRPRQVEVWFQNRRARTK 172
                     678899***********************************************98 PP
2HD-ZIP_I/II114.18.4e-37118206189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+k+q++lLE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr  ++lkeen rL++e ++Lr+
  Zosma6g02230.1 118 KKKLRLTKDQSTLLERSFKEHSTLSPKQKLALAKALDLRPRQVEVWFQNRRARTKLKQTEIDFEFLKRYSESLKEENIRLQNEISQLRS 206
                     59*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-18108175IPR009057Homeodomain-like
PROSITE profilePS5007116.86114174IPR001356Homeobox domain
SMARTSM003894.0E-15116178IPR001356Homeobox domain
CDDcd000863.68E-14118175No hitNo description
PfamPF000461.4E-15118172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-17123172IPR009057Homeodomain-like
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
SMARTSM003405.2E-13174217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIYDVVDTGL VLGLTYGGTN CSSSQVASAL KLTKSRNGKK LNDSPSNHSD ANEPSLTLGL  60
VAESNKRCGS MVDRDQKSTH PSSPQSAASS LSNNNFPTPN IKRETDFARN DSQDGSAKKK  120
LRLTKDQSTL LERSFKEHST LSPKQKLALA KALDLRPRQV EVWFQNRRAR TKLKQTEIDF  180
EFLKRYSESL KEENIRLQNE ISQLRSMKLT PGGEAGGGRG YNSQFNPTAK PRMSTCPSSD  240
EDASAKKSFL YNSNITHHPS SSKTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415318.11e-50PREDICTED: homeobox-leucine zipper protein HOX19-like
SwissprotA2XE762e-45HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL42e-45HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0K9NR910.0A0A0K9NR91_ZOSMR; Homeobox-leucine zipper protein 9
STRINGGSMUA_Achr8P26480_0013e-50(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.14e-39HD-ZIP family protein