PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma70g00480.1

Common Name

ZOSMA_70G00480

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 262aa MW: 29542.8 Da PI: 9.1441

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma70g00480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.6	2.5e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++Ca+dC+++p++ +++q++ + +++k++G++ +l+l++a+++++r+ +++sl+yeA+ r+ +P+yG vg+++++++ql+q Zosma70g00480.1 4 SCNGCRVLRKGCAQDCTIRPCLqwietADSQANVTLFLAKFYGRAGLLNLINAAEHHHRPFIFRSLLYEACGRIVNPIYGTVGLLWSGNWQLCQ 97 6*******************9999777889********************************************************** PP DUF260 90 lkaelallk 98 +++e++l + Zosma70g00480.1 98 TAVEAVLKG 106 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.927	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MRMSCNGCRV LRKGCAQDCT IRPCLQWIET ADSQANVTLF LAKFYGRAGL LNLINAAEHH 60 HRPFIFRSLL YEACGRIVNP IYGTVGLLWS GNWQLCQTAV EAVLKGAPVI QIPPETTDET 120 ANPIPMPLLK AFDIRHVSRD HKTQQVDLHK VKVANSTRTR FKRSSKRHVI NNHDNSGNYK 180 PPIFDVHGND RRWMNLYETN KSTAIRSGQP IQTTTEDSKE DNVKLELTIG RCPISPPTDA 240 VSHSTTVDRC IELSMSDYKR F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395577.1	5e-86	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-71	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0K9NQH3	0.0	A0A0K9NQH3_ZOSMR; LOB domain-containing protein 41
STRING	Aquca_026_00293.1	2e-79	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-71	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Zosma70g00480.1