PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma70g00490.1

Common Name

ZOSMA_70G00490

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 266aa MW: 28571.6 Da PI: 9.8155

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma70g00490.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.7	2.8e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC+++p++ p++q +++ +++k++G++ +l+l++a p+++r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q Zosma70g00490.1 4 SCNGCRVLRKGCSEDCTIRPCLqwiksPEAQGNATVFLAKFYGRAGLLNLINAGPDKHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNRQLCQ 97 6******************************************************************************************* PP DUF260 90 lkaelallkee 100 +++e++l +e+ Zosma70g00490.1 98 AAVEAVLKGEP 108 **9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.049	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCT IRPCLQWIKS PEAQGNATVF LAKFYGRAGL LNLINAGPDK 60 HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNRQLCQAAV EAVLKGEPIV QIPSEKAADI 120 SIPPLKTFDI RHVTKNAAKL NVSKASQTPF KLSSIGAGAK HVNRLRRPRR ERSHHESGGG 180 TTTTTTSSAS GSMISAETVE PSTPDPERRT TSVDPEDELD LTLGLGFSSS AKANKHSSLS 240 SCSPNQAKIP SERCRVDNLA LFLTA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	171	RPRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215745.1	2e-85	LOB domain-containing protein 41
Swissprot	Q9M886	9e-78	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0K9NSR0	0.0	A0A0K9NSR0_ZOSMR; Putative LOB domain-containing protein
STRING	EMJ16944	6e-85	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-80	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Zosma70g00490.1