PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma71g00200.1

Common Name

ZOSMA_71G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 178aa MW: 20363.9 Da PI: 9.3364

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma71g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.2e-16	50	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY YA +GF+ ++++s+k + i + +fvCsk+ +++++ ++ +k +r++ + r +Cka+++ k ++ + +w+v+ ++++H+Hel Zosma71g00200.1 50 QFYYYYAGYAGFDHVRRYSSKL-IDSVIQSMKFVCSKQRESTKKMDTdlveYHKISRKSHNVRESCKAQITFKIDTgSTNWRVHIFVEHHTHEL 142 6***********99999998.8888********9999988889887888999999***********9**************9 PP FAR1 90 a 90 a Zosma71g00200.1 143 A 143 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-13	50	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDDDVQTSIS IDSFSRNTNA LSIVNSNDTS PPPPIPYVGQ IFPDLESGRQ FYYYYAGYAG 60 FDHVRRYSSK LIDSVIQSMK FVCSKQREST KKMDTDLVEY HKISRKSHNV RESCKAQITF 120 KIDTGSTNWR VHIFVEHHTH ELATLKKRCF LRVNRHMSST SRGLLDSLNS AHIQPSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NQA3	1e-130	A0A0K9NQA3_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-09	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma71g00200.1