PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma71g00420.1
Common NameZOSMA_71G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 235aa    MW: 25644.7 Da    PI: 8.6014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma71g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32154212159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s  prsYYrCt+++C+vkk+v+r a d+++v++tYeg Hnh+
  Zosma71g00420.1 154 LDDGYRWRKYGQKAVKNSMSPRSYYRCTHPTCEVKKQVQRLAGDTSIVVTTYEGVHNHP 212
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-33140212IPR003657WRKY domain
SuperFamilySSF1182901.31E-28147213IPR003657WRKY domain
PROSITE profilePS5081128.323149214IPR003657WRKY domain
SMARTSM007747.1E-38154213IPR003657WRKY domain
PfamPF031066.3E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKIETAAGTS SIDQTDRNHT YRDRTDMEGF QGGGQSSQQQ QQSFGNLLPS PLAPPLVSNN  60
PALEWVDLLL SGRCGTGTQQ ELLQSLQTGQ GFSTGEPSGC SNEVLSEIFP MNSTGSAGVG  120
VDVNDVRGSK GGGKMKKAAK PRFAFQTRSA DDILDDGYRW RKYGQKAVKN SMSPRSYYRC  180
THPTCEVKKQ VQRLAGDTSI VVTTYEGVHN HPYEKLMESL APLLKQLQFL TRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24145211874Probable WRKY transcription factor 4
2lex_A1e-24145211874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841224.13e-62PREDICTED: probable WRKY transcription factor 24
TrEMBLA0A0K9NQS01e-175A0A0K9NQS0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-50WRKY DNA-binding protein 56