PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma738g00020.1
Common NameZOSMA_738G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 135aa    MW: 15254.7 Da    PI: 10.9256
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma738g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1287.1e-092623190
              FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      ++f Csk+g+++     ++ +rr++ ++r+g  a++k k+ + +++w+ ++++ +HnH+++
  Zosma738g00020.1  2 KRFLCSKQGSPSLILPPNNGTRRKNGVSRCGYFASIKFKRIDrSDNWVTDTVNFDHNHPFT 62
                      79**********99998999*********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-5262IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKRFLCSKQG SPSLILPPNN GTRRKNGVSR CGYFASIKFK RIDRSDNWVT DTVNFDHNHP  60
FTTPSKIRYL PINRSISHTS KLLFSSLAEV NVPVSQQAVY FSNQLGGVQN MGCMKMDINN  120
MVRDVRILKI MMSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRW97e-95A0A0K9NRW9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-09FAR1-related sequence 5