PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7444g00020.1
Common NameZOSMA_93G00840
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 141aa    MW: 15246.3 Da    PI: 9.6589
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7444g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011830123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ Fs+   L  H  +H
  Zosma7444g00020.1  8 FECKTCSRQFSSFQALGGHRASH 30
                       89**********99999998887 PP
2zf-C2H211.50.00095476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C  Cg +Fs    L  H+r+H
  Zosma7444g00020.1 54 HTCYVCGHMFSLGQALGGHMRRH 76
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.65E-7776No hitNo description
PfamPF139127.4E-12730IPR007087Zinc finger, C2H2
SMARTSM003550.42830IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
PfamPF139121.6E-65378IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6815481IPR007087Zinc finger, C2H2
SMARTSM003553.85476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
PITTAHVFEC KTCSRQFSSF QALGGHRASH GKPKLLNDYH VSILNPNRKP AKTHTCYVCG  60
HMFSLGQALG GHMRRHRGVS KKDHHEHMEK KNHGGGGGGG GGYHHNRTMS LDLNMAPPVA  120
MENDSEVGLL SFTLGLPQPC *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667696.19e-31PREDICTED: zinc finger protein ZAT11-like
RefseqXP_017618702.19e-31PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0K9NKZ52e-99A0A0K9NKZ5_ZOSMR; Putative Zinc finger protein
STRINGGorai.013G023300.14e-30(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-25C2H2 family protein