PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma74g00450.1
Common NameZOSMA_74G00450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 222aa    MW: 25197.6 Da    PI: 7.8455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma74g00450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.12.6e-2694197190
                      EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k+ltpsdv+k++rlv+pkk+a ++               + ++ +++l + d++g+ W ++++y+++s+++v+tkGW++Fv+ ++L++gD+v
  Zosma74g00450.1  94 FKKELTPSDVGKLNRLVIPKKYAVRYfpdmqcafssssssTY-NNDGMMLEFHDREGKLWIFRYCYWRSSQSFVFTKGWNKFVNTKKLCSGDTV 186
                      89**************************99999998877533.34889********************************************** PP

                      EEEE-SS.SEE CS
               B3  81 vFkldgr.sef 90 
                       F+ +++ +++
  Zosma74g00450.1 187 AFYKSDEkQSE 197
                      ***66553333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-3491205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-2693202IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-2193203No hitNo description
PROSITE profilePS5086312.44994206IPR003340B3 DNA binding domain
SMARTSM010191.0E-1794209IPR003340B3 DNA binding domain
PfamPF023626.0E-2394200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNTDHARGKD LAGMKLLSNA AVVMEETADS KNRGTTCSSS SSSLAAVVMN YPCFNFFPLT  60
YDAMFQPAIT DHTSFVKFLI AAEHPPAAAA RELFKKELTP SDVGKLNRLV IPKKYAVRYF  120
PDMQCAFSSS SSSTYNNDGM MLEFHDREGK LWIFRYCYWR SSQSFVFTKG WNKFVNTKKL  180
CSGDTVAFYK SDEKQSENMC FVIDTHYTSQ EEWVQAIWHV H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-309019710109DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770718.18e-40AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A0K9NPL01e-167A0A0K9NPL0_ZOSMR; Uncharacterized protein
STRINGXP_008800116.11e-35(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-34B3 family protein