PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma74g00830.1

Common Name

ZOSMA_74G00830

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 363aa MW: 41872 Da PI: 6.2047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma74g00830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.3	3.3e-45	47	184	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka.....eekewyfFskrdkkyatgkrknratksgyW 83 +pGfrFhPt+ee++ +yL++kvegk++++ + i +d+y+++Pw+Lp ++ke++f+++rd+ky++g+r+nr+t+sgyW Zosma74g00830.1 47 MPGFRFHPTEEEIIEFYLRRKVEGKPFNV-DLIFFLDLYRFDPWELPGidktqktD--MgigtvGDKELFFYVPRDRKYRNGDRPNRVTTSGYW 137 79*************************.99**********9546666551..144555889*********************** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg d+ ++s+ ++ +glkktLvfy+g+apkg +t+W+m+eyrl Zosma74g00830.1 138 KATGADRVIKSElnPRRPIGLKKTLVFYSGKAPKGIRTTWIMNEYRL 184 ******98877788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-50	46	204	IPR003441	NAC domain
PROSITE profile	PS51005	51.807	46	205	IPR003441	NAC domain
Pfam	PF02365	3.7E-23	48	184	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MKKRDEEVEE NADRSDEITA EEITVGEQIA VDGEGEKVDK HEYDLVMPGF RFHPTEEEII 60 EFYLRRKVEG KPFNVDLIFF LDLYRFDPWE LPGIDKTQKT DMGIGTVGDK ELFFYVPRDR 120 KYRNGDRPNR VTTSGYWKAT GADRVIKSEL NPRRPIGLKK TLVFYSGKAP KGIRTTWIMN 180 EYRLPHLLVQ KLKKPEISLC RVYNRSEVGD RHYHYQYNSR LSTSSSRVKT KSTANSTVES 240 SHQKIVTRQL LNIDPLAPSN TADHEPASGN YLPKEGGEEM EFEILRPTTT TVVVDDISME 300 YMGSEHHHQD IKNYLQKSTD RFPLPDISSP SSMLQNSSQK CLSDWIPIAV DRNVSVEYYY 360 ND*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MKKRDEEVEE NADRSDEITA EEITVGEQIA VDGEGEKVDK HEYDLVMPGF RFHPTEEEII  60
EFYLRRKVEG KPFNVDLIFF LDLYRFDPWE LPGIDKTQKT DMGIGTVGDK ELFFYVPRDR  120
KYRNGDRPNR VTTSGYWKAT GADRVIKSEL NPRRPIGLKK TLVFYSGKAP KGIRTTWIMN  180
EYRLPHLLVQ KLKKPEISLC RVYNRSEVGD RHYHYQYNSR LSTSSSRVKT KSTANSTVES  240
SHQKIVTRQL LNIDPLAPSN TADHEPASGN YLPKEGGEEM EFEILRPTTT TVVVDDISME  300
YMGSEHHHQD IKNYLQKSTD RFPLPDISSP SSMLQNSSQK CLSDWIPIAV DRNVSVEYYY  360
ND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-46	48	205	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-46	48	205	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-46	48	205	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-46	48	205	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-46	48	205	19	165	NAC domain-containing protein 19
4dul_B	4e-46	48	205	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022861510.1	1e-89	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-83	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0K9NPP1	0.0	A0A0K9NPP1_ZOSMR; NAC domain protein
STRING	XP_008788351.1	4e-88	(Phoenix dactylifera)
STRING	ONIVA01G44740.1	5e-87	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-84	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Zosma74g00830.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]