PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma753g00010.1
Common NameZOSMA_753G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 188aa    MW: 19792.7 Da    PI: 10.3841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma753g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001386101116
                       EEETTTTEEESSHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnL 16 
                       y+C++C+ksF +   L
  Zosma753g00010.1  86 YSCKKCKKSFGSYQAL 101
                       99********887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-986107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-5131159No hitNo description
PfamPF139125.0E-11133156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494133160IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNLRKNPRKT TKFGAGGDDD LNEIVSCMFL FATKVTDFSS STSSSSASVA GAAVAAATAV  60
LSLVSVSDAV LGKRKTKSEM GGVDLYSCKK CKKSFGSYQA LGGHRASTKR TNGSCCLSLP  120
ISSSVSGDRN PLHECQICFK VFVSGQALGG HKRAHMNATT IEMQNKEEKR NRLILRIKGP  180
ALVHSGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579768.12e-18zinc finger protein ZAT9-like
TrEMBLA0A0K9NRR11e-134A0A0K9NRR1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.24e-18zinc-finger protein 2