PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma75g00440.1

Common Name

ZOSMA_75G00440

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 454aa MW: 48761.6 Da PI: 9.4936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma75g00440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	220	241	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg++F ++ ++ H + H Zosma75g00440.1 220 CHKCGERFGKWEAMEAHHLSkH 241 *****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	220	241	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-22	243	452	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.0E-8	254	429	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MGRRGEDWEE VEEKKSTPKK QVWFALKKTL HCRSEPSEVY DPRSKGNLGS ILTRKGGRSG 60 CSRSIANLKD VIHGSKRHLE RPPSTCSPRS IGSSEFLNPI THEVILSNST CELKITGCHD 120 SGTGTSVGVG TTAGFTSTYV GTLKPGTPGP GGGGGFGGSL LYNSSLRGTI GATPPRKAPF 180 TGSALSNAVF GEGGFGGVGI HRASSRSRTS DSNTANTVGC HKCGERFGKW EAMEAHHLSK 240 HAVTELVEGD SSRKIVEIIC RTSWLKSETS CGRIERVLKI HNTQKTLARF EEYREMVKNK 300 ASKLPKKHPR CLADGNELLR FYGTTVECSL GMGGLSNLCT SEKCSACCII RHGFSTKKEV 360 LGGIGVFTTS TSGRAFESIS VSEQSNPCIR KALLVCRVIA GRVHRPLDNF QELTGQSGFD 420 SLAGKVGLYA NIEELYLLNS RALLPCFVVI CKP*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MGRRGEDWEE VEEKKSTPKK QVWFALKKTL HCRSEPSEVY DPRSKGNLGS ILTRKGGRSG  60
CSRSIANLKD VIHGSKRHLE RPPSTCSPRS IGSSEFLNPI THEVILSNST CELKITGCHD  120
SGTGTSVGVG TTAGFTSTYV GTLKPGTPGP GGGGGFGGSL LYNSSLRGTI GATPPRKAPF  180
TGSALSNAVF GEGGFGGVGI HRASSRSRTS DSNTANTVGC HKCGERFGKW EAMEAHHLSK  240
HAVTELVEGD SSRKIVEIIC RTSWLKSETS CGRIERVLKI HNTQKTLARF EEYREMVKNK  300
ASKLPKKHPR CLADGNELLR FYGTTVECSL GMGGLSNLCT SEKCSACCII RHGFSTKKEV  360
LGGIGVFTTS TSGRAFESIS VSEQSNPCIR KALLVCRVIA GRVHRPLDNF QELTGQSGFD  420
SLAGKVGLYA NIEELYLLNS RALLPCFVVI CKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267824.1	0.0	PREDICTED: uncharacterized protein LOC104604941
Refseq	XP_010267825.1	0.0	PREDICTED: uncharacterized protein LOC104604941
TrEMBL	A0A0K9NPF0	0.0	A0A0K9NPF0_ZOSMR; C2H2 zinc finger protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3277	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-159	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma75g00440.1