PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma761g00020.1

Common Name

ZOSMA_761G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 373aa MW: 42459.3 Da PI: 8.8596

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma761g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.9e-20	85	177	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+++GFsvr +++++ +r+++ ++r++ Cskeg+ + + + +rr++a +r++C a++k+k+e +++w v++++leHnH+l+ Zosma761g00020.1 85 YYGYASKMGFSVRLGSTNYKtskdDRKKNLVMRRLLCSKEGTVDLLHPPKLGKRRKNAISRCDCCASIKIKREGmSEVWIVKHIVLEHNHPLT 177 899********987666556667788899********999998899******************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-17	85	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.6E-7	299	338	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MPNTNYVHHH NNDTPLDNLR SPISSENNDL TGQLNAITSS VNTSLSFFVP KQPTDTNSSS 60 DNVKLNSPPT VGQFYSSYSD ALDQYYGYAS KMGFSVRLGS TNYKTSKDDR KKNLVMRRLL 120 CSKEGTVDLL HPPKLGKRRK NAISRCDCCA SIKIKREGMS EVWIVKHIVL EHNHPLTTPS 180 KVRFLPINRL ISSTSRLLFQ SFSEVNVPVS QQTAYFSSQV GGIEHMGCTQ LDISNMCHDD 240 RVDLKNYNVD LLVEEFELKK SVQPDFFNSI VKDSSGRLKH VFWVDSIMIQ HFKLFEDAVT 300 FDTTYKTNVY SLIFGMFCGV NHHRKTVIFG SALIPEVTYH FVNGYCRTMK AIFLYPNVCF 360 YIQKNNHMFS SY*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MPNTNYVHHH NNDTPLDNLR SPISSENNDL TGQLNAITSS VNTSLSFFVP KQPTDTNSSS  60
DNVKLNSPPT VGQFYSSYSD ALDQYYGYAS KMGFSVRLGS TNYKTSKDDR KKNLVMRRLL  120
CSKEGTVDLL HPPKLGKRRK NAISRCDCCA SIKIKREGMS EVWIVKHIVL EHNHPLTTPS  180
KVRFLPINRL ISSTSRLLFQ SFSEVNVPVS QQTAYFSSQV GGIEHMGCTQ LDISNMCHDD  240
RVDLKNYNVD LLVEEFELKK SVQPDFFNSI VKDSSGRLKH VFWVDSIMIQ HFKLFEDAVT  300
FDTTYKTNVY SLIFGMFCGV NHHRKTVIFG SALIPEVTYH FVNGYCRTMK AIFLYPNVCF  360
YIQKNNHMFS SY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NPN0	0.0	A0A0K9NPN0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma761g00020.1